Inference amortization methods share information across multiple posterior-inference problems, allowing each to be carried out more efficiently. Generally, they require the inversion of the dependency structure in the generative model, as the modeller must learn a mapping from observations to distributions approximating the posterior. Previous approaches have involved inverting the dependency structure in a heuristic way that fails to capture these dependencies correctly, thereby limiting the achievable accuracy of the resulting approximations. We introduce an algorithm for faithfully, and minimally, inverting the graphical model structure of any generative model. Such inverses have two crucial properties: (a) they do not encode any independence assertions that are absent from the model and; (b) they are local maxima for the number of true independencies encoded. We prove the correctness of our approach and empirically show that the resulting minimally faithful inverses lead to better inference amortization than existing heuristic approaches.

Many approaches are available to reliably model univariate distributions of real-valued variables.

Copulas are a powerful tool for modeling multivariate distributions as they allow to separately estimate the univariate marginal distributions and the joint dependency structure. However, known parametric copulas offer limited flexibility especially in high dimensions, while commonly used non-parametric methods suffer from the curse of dimensionality. A popular remedy is to construct a tree-based hierarchy of conditional bivariate copulas.In this paper, we propose a flexible, yet conceptually simple alternative based on implicit generative neural networks.The key challenge is to ensure marginal uniformity of the estimated copula distribution.We achieve this by learning a multivariate latent distribution with unspecified marginals but the desired dependency structure.By applying the probability integral transform, we can then obtain samples from the high-dimensional copula distribution without relying on parametric assumptions or the need to find a suitable tree structure.Experiments on synthetic and real data from finance, physics, and image generation demonstrate the performance of this approach.

Semi-implicit graph variational auto-encoder (SIG-VAE) is proposed to expand the flexibility of variational graph auto-encoders (VGAE) to model graph data. SIG-VAE employs a hierarchical variational framework to enable neighboring node sharing for better generative modeling of graph dependency structure, together with a Bernoulli-Poisson link decoder. Not only does this hierarchical construction provide a more flexible generative graph model to better capture real-world graph properties, but also does SIG-VAE naturally lead to semi-implicit hierarchical variational inference that allows faithful modeling of implicit posteriors of given graph data, which may exhibit heavy tails, multiple modes, skewness, and rich dependency structures. SIG-VAE integrates a carefully designed generative model, well suited to model real-world sparse graphs, and a sophisticated variational inference network, which propagates the graph structural information and distribution uncertainty to capture complex posteriors. SIG-VAE clearly outperforms a simple combination of VGAE with variational inference, including semi-implicit variational inference~(SIVI) or normalizing flow (NF), which does not propagate uncertainty in its inference network, and provides more interpretable latent representations than VGAE does. Extensive experiments with a variety of graph data show that SIG-VAE significantly outperforms state-of-the-art methods on several different graph analytic tasks.

We consider the problem of estimating a linear time-invariant (LTI) dynamical system from a single trajectory via streaming algorithms, which is encountered in several applications including reinforcement learning (RL) and time-series analysis. While the LTI system estimation problem is well-studied in the {\em offline} setting, the practically important streaming/online setting has received little attention. Standard streaming methods like stochastic gradient descent (SGD) are unlikely to work since streaming points can be highly correlated. In this work, we propose a novel streaming algorithm, SGD with Reverse Experience Replay (SGD-RER), that is inspired by the experience replay (ER) technique popular in the RL literature. SGD-RER divides data into small buffers and runs SGD backwards on the data stored in the individual buffers. We show that this algorithm exactly deconstructs the dependency structure and obtains information theoretically optimal guarantees for both parameter error and prediction error. Thus, we provide the first -- to the best of our knowledge -- optimal SGD-style algorithm for the classical problem of linear system identification with a first order oracle. Furthermore, SGD-RER can be applied to more general settings like sparse LTI identification with known sparsity pattern, and non-linear dynamical systems. Our work demonstrates that the knowledge of data dependency structure can aid us in designing statistically and computationally efficient algorithms which can ``decorrelate'' streaming samples.

We instead rely on weak supervision sources having some structure by virtue of being encoded programmatically.

However, it was designed to compare a single pair of curves. In many applications, such as in metabolomics and image series analysis, alignment is simultaneously needed for multiple pairs. Because the underlying warping functions are often related, independent application of DTW to each pair is a sub-optimal solution. Y et, it is largely unknown how to efficiently conduct a joint alignment with all warping functions simultaneously considered, since any given warping function is constrained by the others and dynamic programming cannot be applied. In this paper, we show that the joint alignment problem can be transformed into a network flow problem and thus can be exactly and efficiently solved by the max flow algorithm, with a guarantee of global optimality.

Inference amortization methods share information across multiple posterior-inference problems, allowing each to be carried out more efficiently. Generally, they require the inversion of the dependency structure in the generative model, as the modeller must learn a mapping from observations to distributions approximating the posterior. Previous approaches have involved inverting the dependency structure in a heuristic way that fails to capture these dependencies correctly, thereby limiting the achievable accuracy of the resulting approximations. We introduce an algorithm for faithfully, and minimally, inverting the graphical model structure of any generative model. Such inverses have two crucial properties: (a) they do not encode any independence assertions that are absent from the model and; (b) they are local maxima for the number of true independencies encoded. We prove the correctness of our approach and empirically show that the resulting minimally faithful inverses lead to better inference amortization than existing heuristic approaches.